3D structure

PDB id
6YAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.48 Å

Loop

Sequence
CAGAUCAAAACCAACC*GCUUUG*CUAG
Length
26 nucleotides
Bulged bases
6YAN|1|2|A|223, 6YAN|1|2|U|224, 6YAN|1|2|C|225, 6YAN|1|2|U|277
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YAN|1|2|C|220
6YAN|1|2|A|221
6YAN|1|2|G|222
6YAN|1|2|A|223
6YAN|1|2|U|224
6YAN|1|2|C|225
6YAN|1|2|A|226
6YAN|1|2|A|227
6YAN|1|2|A|228
6YAN|1|2|A|229
6YAN|1|2|C|230
6YAN|1|2|C|231
6YAN|1|2|A|232
6YAN|1|2|A|233
6YAN|1|2|C|234
6YAN|1|2|C|235
*
6YAN|1|2|G|274
6YAN|1|2|C|275
6YAN|1|2|U|276
6YAN|1|2|U|277
6YAN|1|2|U|278
6YAN|1|2|G|279
*
6YAN|1|2|C|286
6YAN|1|2|U|287
6YAN|1|2|A|288
6YAN|1|2|G|289

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain G
40S ribosomal protein S4
Chain I
40S ribosomal protein S6
Chain K
40S ribosomal protein S8
Chain N
Ribosomal protein S11

Coloring options:

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