J3_6YAN_014
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- CAGAUCAAAACCAACC*GCUUUG*CUAG
- Length
- 26 nucleotides
- Bulged bases
- 6YAN|1|2|A|223, 6YAN|1|2|U|224, 6YAN|1|2|C|225, 6YAN|1|2|U|277
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YAN|1|2|C|220
6YAN|1|2|A|221
6YAN|1|2|G|222
6YAN|1|2|A|223
6YAN|1|2|U|224
6YAN|1|2|C|225
6YAN|1|2|A|226
6YAN|1|2|A|227
6YAN|1|2|A|228
6YAN|1|2|A|229
6YAN|1|2|C|230
6YAN|1|2|C|231
6YAN|1|2|A|232
6YAN|1|2|A|233
6YAN|1|2|C|234
6YAN|1|2|C|235
*
6YAN|1|2|G|274
6YAN|1|2|C|275
6YAN|1|2|U|276
6YAN|1|2|U|277
6YAN|1|2|U|278
6YAN|1|2|G|279
*
6YAN|1|2|C|286
6YAN|1|2|U|287
6YAN|1|2|A|288
6YAN|1|2|G|289
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain I
- 40S ribosomal protein S6
- Chain K
- 40S ribosomal protein S8
- Chain N
- Ribosomal protein S11
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