3D structure

PDB id
6YAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.48 Å

Loop

Sequence
UGGA*UUAAGA*UA
Length
12 nucleotides
Bulged bases
6YAN|1|2|G|917
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YAN|1|2|U|672
6YAN|1|2|G|673
6YAN|1|2|G|674
6YAN|1|2|A|675
*
6YAN|1|2|U|913
6YAN|1|2|U|914
6YAN|1|2|A|915
6YAN|1|2|A|916
6YAN|1|2|G|917
6YAN|1|2|A|918
*
6YAN|1|2|U|1018
6YAN|1|2|A|1019

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain J
ribosomal protein eS7
Chain N
Ribosomal protein S11
Chain P
ribosomal protein uS15
Chain Y
Ribosomal protein S15a
Chain Z
40S ribosomal protein uS12
Chain c
40S ribosomal protein S27

Coloring options:

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