J3_6YBW_007
3D structure
- PDB id
- 6YBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translational initiation complex - 40S body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- U(OMG)GA*UUAAGAG*CAUUA
- Length
- 16 nucleotides
- Bulged bases
- 6YBW|1|A|G|921
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YBW|1|A|U|682
6YBW|1|A|OMG|683
6YBW|1|A|G|684
6YBW|1|A|A|685
*
6YBW|1|A|U|917
6YBW|1|A|U|918
6YBW|1|A|A|919
6YBW|1|A|A|920
6YBW|1|A|G|921
6YBW|1|A|A|922
6YBW|1|A|G|923
*
6YBW|1|A|C|1019
6YBW|1|A|A|1020
6YBW|1|A|U|1021
6YBW|1|A|U|1022
6YBW|1|A|A|1023
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S11
- Chain E
- 40S ribosomal protein S23
- Chain G
- 40S ribosomal protein S7
- Chain H
- 40S ribosomal protein S27
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
Coloring options: