J3_6YDW_002

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AAUU*AUAAAAAU*AGU

Length

15 nucleotides

Bulged bases

6YDW|1|AA|A|42

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDW|1|AA|A|41
6YDW|1|AA|A|42
6YDW|1|AA|U|43
6YDW|1|AA|U|44
*
6YDW|1|AA|A|179
6YDW|1|AA|U|180
6YDW|1|AA|A|181
6YDW|1|AA|A|182
6YDW|1|AA|A|183
6YDW|1|AA|A|184
6YDW|1|AA|A|185
6YDW|1|AA|U|186
*
6YDW|1|AA|A|212
6YDW|1|AA|G|213
6YDW|1|AA|U|214

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain AP

28S ribosomal protein S16, mitochondrial

Chain Ac

Mitochondrial ribosomal protein S25

Chain BC

Elongation factor G, mitochondrial