J3_6YDW_005

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAUAAUC*GAUAGACCUUAC*GAAA

Length

23 nucleotides

Bulged bases

6YDW|1|AA|A|564, 6YDW|1|AA|U|580, 6YDW|1|AA|A|581, 6YDW|1|AA|G|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDW|1|AA|U|561
6YDW|1|AA|A|562
6YDW|1|AA|U|563
6YDW|1|AA|A|564
6YDW|1|AA|A|565
6YDW|1|AA|U|566
6YDW|1|AA|C|567
*
6YDW|1|AA|G|578
6YDW|1|AA|A|579
6YDW|1|AA|U|580
6YDW|1|AA|A|581
6YDW|1|AA|G|582
6YDW|1|AA|A|583
6YDW|1|AA|C|584
6YDW|1|AA|C|585
6YDW|1|AA|U|586
6YDW|1|AA|U|587
6YDW|1|AA|A|588
6YDW|1|AA|C|589
*
6YDW|1|AA|G|706
6YDW|1|AA|A|707
6YDW|1|AA|A|708
6YDW|1|AA|A|709

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AJ

Mitochondrial ribosomal protein S10

Chain AN

Mitochondrial ribosomal protein S14

Chain AV

tRNAMet