J3_6YDW_006
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUUG*CAG*CUUAUG
- Length
- 13 nucleotides
- Bulged bases
- 6YDW|1|AA|U|697, 6YDW|1|AA|U|699
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YDW_006 not in the Motif Atlas
- Geometric match to J3_5J7L_007
- Geometric discrepancy: 0.2184
- The information below is about J3_5J7L_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82572.1
- Basepair signature
- cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YDW|1|AA|C|595
6YDW|1|AA|U|596
6YDW|1|AA|U|597
6YDW|1|AA|G|598
*
6YDW|1|AA|C|605
6YDW|1|AA|A|606
6YDW|1|AA|G|607
*
6YDW|1|AA|C|695
6YDW|1|AA|U|696
6YDW|1|AA|U|697
6YDW|1|AA|A|698
6YDW|1|AA|U|699
6YDW|1|AA|G|700
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AN
- Mitochondrial ribosomal protein S14
- Chain Ai
- mS33
- Chain BC
- Elongation factor G, mitochondrial
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