J3_6YDW_008

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAUUU*AUAUCCACCACAC*GGAG

Length

22 nucleotides

Bulged bases

6YDW|1|AA|U|724, 6YDW|1|AA|A|743

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDW|1|AA|C|721
6YDW|1|AA|A|722
6YDW|1|AA|U|723
6YDW|1|AA|U|724
6YDW|1|AA|U|725
*
6YDW|1|AA|A|737
6YDW|1|AA|U|738
6YDW|1|AA|A|739
6YDW|1|AA|U|740
6YDW|1|AA|C|741
6YDW|1|AA|C|742
6YDW|1|AA|A|743
6YDW|1|AA|C|744
6YDW|1|AA|C|745
6YDW|1|AA|A|746
6YDW|1|AA|C|747
6YDW|1|AA|A|748
6YDW|1|AA|C|749
*
6YDW|1|AA|G|778
6YDW|1|AA|G|779
6YDW|1|AA|A|780
6YDW|1|AA|G|781

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain Ag

Death associated protein 3