J3_6YDW_009
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 6YDW|1|BA|G|254, 6YDW|1|BA|G|339
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YDW_009 not in the Motif Atlas
- Geometric match to J3_5J7L_038
- Geometric discrepancy: 0.1274
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YDW|1|BA|C|251
6YDW|1|BA|G|252
6YDW|1|BA|A|253
6YDW|1|BA|G|254
6YDW|1|BA|C|255
6YDW|1|BA|U|256
6YDW|1|BA|A|257
*
6YDW|1|BA|U|320
6YDW|1|BA|A|321
6YDW|1|BA|G|322
*
6YDW|1|BA|C|338
6YDW|1|BA|G|339
6YDW|1|BA|A|340
6YDW|1|BA|G|341
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B7
- Mitochondrial ribosomal protein L34
- Chain BD
- Uncharacterized protein
- Chain Be
- Mitochondrial ribosomal protein L41
- Chain Bi
- Mitochondrial ribosomal protein L45
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