J3_6YDW_019
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUAAAAUCUUAAUACUACCAUAG*CAAUUGAG*CAACAAAUUCACCAACAUAAUCCCAAAAACUAAUAACAAAC
- Length
- 72 nucleotides
- Bulged bases
- 6YDW|1|BA|A|493, 6YDW|1|BA|U|553, 6YDW|1|BA|C|561, 6YDW|1|BA|U|566, 6YDW|1|BA|A|574, 6YDW|1|BA|C|575, 6YDW|1|BA|U|576, 6YDW|1|BA|A|577, 6YDW|1|BA|U|579, 6YDW|1|BA|A|585
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDW|1|BA|G|482
6YDW|1|BA|U|483
6YDW|1|BA|A|484
6YDW|1|BA|A|485
6YDW|1|BA|A|486
6YDW|1|BA|A|487
6YDW|1|BA|U|488
6YDW|1|BA|C|489
6YDW|1|BA|U|490
6YDW|1|BA|U|491
6YDW|1|BA|A|492
6YDW|1|BA|A|493
6YDW|1|BA|U|494
6YDW|1|BA|A|495
6YDW|1|BA|C|496
6YDW|1|BA|U|497
6YDW|1|BA|A|498
6YDW|1|BA|C|499
6YDW|1|BA|C|500
6YDW|1|BA|A|501
6YDW|1|BA|U|502
6YDW|1|BA|A|503
6YDW|1|BA|G|504
*
6YDW|1|BA|C|524
6YDW|1|BA|A|525
6YDW|1|BA|A|526
6YDW|1|BA|U|527
6YDW|1|BA|U|528
6YDW|1|BA|G|529
6YDW|1|BA|A|530
6YDW|1|BA|G|531
*
6YDW|1|BA|C|546
6YDW|1|BA|A|547
6YDW|1|BA|A|548
6YDW|1|BA|C|549
6YDW|1|BA|A|550
6YDW|1|BA|A|551
6YDW|1|BA|A|552
6YDW|1|BA|U|553
6YDW|1|BA|U|554
6YDW|1|BA|C|555
6YDW|1|BA|A|556
6YDW|1|BA|C|557
6YDW|1|BA|C|558
6YDW|1|BA|A|559
6YDW|1|BA|A|560
6YDW|1|BA|C|561
6YDW|1|BA|A|562
6YDW|1|BA|U|563
6YDW|1|BA|A|564
6YDW|1|BA|A|565
6YDW|1|BA|U|566
6YDW|1|BA|C|567
6YDW|1|BA|C|568
6YDW|1|BA|C|569
6YDW|1|BA|A|570
6YDW|1|BA|A|571
6YDW|1|BA|A|572
6YDW|1|BA|A|573
6YDW|1|BA|A|574
6YDW|1|BA|C|575
6YDW|1|BA|U|576
6YDW|1|BA|A|577
6YDW|1|BA|A|578
6YDW|1|BA|U|579
6YDW|1|BA|A|580
6YDW|1|BA|A|581
6YDW|1|BA|C|582
6YDW|1|BA|A|583
6YDW|1|BA|A|584
6YDW|1|BA|A|585
6YDW|1|BA|C|586
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B3
- Uncharacterized protein
- Chain B9
- Ribosomal protein
- Chain BE
- ICT1
- Chain BJ
- Mitochondrial ribosomal protein L10
- Chain BK
- Mitochondrial ribosomal protein L11
- Chain BN
- Uncharacterized protein
- Chain BQ
- Uncharacterized protein
- Chain BU
- Mitochondrial ribosomal protein L20
- Chain BV
- Mitochondrial ribosomal protein L21
- Chain Bo
- Uncharacterized protein
- Chain Bp
- mL53
- Chain Bq
- Uncharacterized protein
- Chain Bt
- Mitochondrial ribosomal protein L57
- Chain Bx
- Mitochondrial ribosomal protein S18A
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