J3_6YEF_002
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACGUUACUAACG*UGC*GAUUU
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YEF_002 not in the Motif Atlas
- Homologous match to J3_4WF9_001
- Geometric discrepancy: 0.1484
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6YEF|1|A|A|56
6YEF|1|A|C|57
6YEF|1|A|G|58
6YEF|1|A|U|59
6YEF|1|A|U|60
6YEF|1|A|A|61
6YEF|1|A|C|62
6YEF|1|A|U|63
6YEF|1|A|A|64
6YEF|1|A|A|65
6YEF|1|A|C|66
6YEF|1|A|G|67
*
6YEF|1|A|U|74
6YEF|1|A|G|75
6YEF|1|A|C|76
*
6YEF|1|A|G|109
6YEF|1|A|A|110
6YEF|1|A|U|111
6YEF|1|A|U|112
6YEF|1|A|U|113
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L29
- Chain 6
- 50S ribosomal protein L34
- Chain W
- 50S ribosomal protein L23
Coloring options: