J3_6YEF_003

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

6YEF|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YEF_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1464

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6YEF|1|A|C|272
6YEF|1|A|A|273
6YEF|1|A|A|274
6YEF|1|A|A|275
6YEF|1|A|C|276
*
6YEF|1|A|G|295
6YEF|1|A|G|296
6YEF|1|A|G|297
6YEF|1|A|U|298
6YEF|1|A|U|299
6YEF|1|A|G|300
6YEF|1|A|U|301
6YEF|1|A|A|302
*
6YEF|1|A|U|415
6YEF|1|A|G|416

Current chains

Chain A

23S rRNA

Nearby chains