J3_6YEF_004

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6YEF|1|A|U|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YEF_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0859

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6YEF|1|A|U|728
6YEF|1|A|G|729
6YEF|1|A|A|730
6YEF|1|A|U|731
6YEF|1|A|C|732
6YEF|1|A|U|733
6YEF|1|A|A|734
*
6YEF|1|A|U|818
6YEF|1|A|A|819
6YEF|1|A|G|820
*
6YEF|1|A|C|836
6YEF|1|A|G|837
6YEF|1|A|A|838
6YEF|1|A|A|839

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain D

50S ribosomal protein L2