3D structure

PDB id
6YEF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAUUG*CAA*UAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YEF_006 not in the Motif Atlas
Homologous match to J3_4WF9_004
Geometric discrepancy: 0.1039
The information below is about J3_4WF9_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6YEF|1|A|C|1335
6YEF|1|A|G|1336
6YEF|1|A|A|1337
6YEF|1|A|U|1338
6YEF|1|A|U|1339
6YEF|1|A|G|1340
*
6YEF|1|A|C|1669
6YEF|1|A|A|1670
6YEF|1|A|A|1671
*
6YEF|1|A|U|1683
6YEF|1|A|A|1684
6YEF|1|A|A|1685
6YEF|1|A|G|1686

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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