J3_6YEF_008

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YEF_008 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.1856

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6YEF|1|A|U|2118
6YEF|1|A|U|2119
6YEF|1|A|G|2120
*
6YEF|1|A|C|2223
6YEF|1|A|U|2224
6YEF|1|A|A|2225
6YEF|1|A|A|2226
6YEF|1|A|C|2227
6YEF|1|A|C|2228
*
6YEF|1|A|G|2249
6YEF|1|A|A|2250
6YEF|1|A|G|2251
6YEF|1|A|A|2252
6YEF|1|A|C|2253
6YEF|1|A|A|2254
6YEF|1|A|G|2255

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain D

50S ribosomal protein L2