J3_6YEF_017

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAG*CUGCAG*CAUUAAG

Length

18 nucleotides

Bulged bases

6YEF|1|a|U|880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|a|C|834
6YEF|1|a|U|835
6YEF|1|a|A|836
6YEF|1|a|A|837
6YEF|1|a|G|838
*
6YEF|1|a|C|865
6YEF|1|a|U|866
6YEF|1|a|G|867
6YEF|1|a|C|868
6YEF|1|a|A|869
6YEF|1|a|G|870
*
6YEF|1|a|C|877
6YEF|1|a|A|878
6YEF|1|a|U|879
6YEF|1|a|U|880
6YEF|1|a|A|881
6YEF|1|a|A|882
6YEF|1|a|G|883

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain h

30S ribosomal protein S8