J3_6YEF_031

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAGCGUGCGAUUGGAUUGCACGUCUAAG*UGAUGGGGAGAAG*UUCGAGU

Length

48 nucleotides

Bulged bases

6YEF|1|A|A|1497, 6YEF|1|A|U|1503, 6YEF|1|A|G|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|A|A|1488
6YEF|1|A|A|1489
6YEF|1|A|G|1490
6YEF|1|A|C|1491
6YEF|1|A|G|1492
6YEF|1|A|U|1493
6YEF|1|A|G|1494
6YEF|1|A|C|1495
6YEF|1|A|G|1496
6YEF|1|A|A|1497
6YEF|1|A|U|1498
6YEF|1|A|U|1499
6YEF|1|A|G|1500
6YEF|1|A|G|1501
6YEF|1|A|A|1502
6YEF|1|A|U|1503
6YEF|1|A|U|1504
6YEF|1|A|G|1505
6YEF|1|A|C|1506
6YEF|1|A|A|1507
6YEF|1|A|C|1508
6YEF|1|A|G|1509
6YEF|1|A|U|1510
6YEF|1|A|C|1511
6YEF|1|A|U|1512
6YEF|1|A|A|1513
6YEF|1|A|A|1514
6YEF|1|A|G|1515
*
6YEF|1|A|U|1565
6YEF|1|A|G|1566
6YEF|1|A|A|1567
6YEF|1|A|U|1568
6YEF|1|A|G|1569
6YEF|1|A|G|1570
6YEF|1|A|G|1571
6YEF|1|A|G|1572
6YEF|1|A|A|1573
6YEF|1|A|G|1574
6YEF|1|A|A|1575
6YEF|1|A|A|1576
6YEF|1|A|G|1577
*
6YEF|1|A|U|1588
6YEF|1|A|U|1589
6YEF|1|A|C|1590
6YEF|1|A|G|1591
6YEF|1|A|A|1592
6YEF|1|A|G|1593
6YEF|1|A|U|1594

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L17