J3_6YEF_032
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCU*ACUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6YEF|1|A|U|2417, 6YEF|1|A|A|2453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YEF_032 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1465
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6YEF|1|A|G|2309
6YEF|1|A|C|2310
6YEF|1|A|U|2311
*
6YEF|1|A|A|2411
6YEF|1|A|C|2412
6YEF|1|A|U|2413
6YEF|1|A|U|2414
6YEF|1|A|A|2415
6YEF|1|A|G|2416
6YEF|1|A|U|2417
6YEF|1|A|G|2418
6YEF|1|A|A|2419
6YEF|1|A|U|2420
6YEF|1|A|C|2421
6YEF|1|A|C|2422
*
6YEF|1|A|G|2448
6YEF|1|A|C|2449
6YEF|1|A|U|2450
6YEF|1|A|C|2451
6YEF|1|A|A|2452
6YEF|1|A|A|2453
6YEF|1|A|C|2454
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L33 2
- Chain 7
- 50S ribosomal protein L35
- Chain O
- 50S ribosomal protein L15
- Chain Z
- 50S ribosomal protein L27
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