J3_6YEF_034

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGG*CUUGAG*CUGACG

Length

15 nucleotides

Bulged bases

6YEF|1|a|U|661

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|a|C|594
6YEF|1|a|G|595
6YEF|1|a|G|596
*
6YEF|1|a|C|659
6YEF|1|a|U|660
6YEF|1|a|U|661
6YEF|1|a|G|662
6YEF|1|a|A|663
6YEF|1|a|G|664
*
6YEF|1|a|C|758
6YEF|1|a|U|759
6YEF|1|a|G|760
6YEF|1|a|A|761
6YEF|1|a|C|762
6YEF|1|a|G|763

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain l

30S ribosomal protein S12

Chain o

30S ribosomal protein S15

Chain q

30S ribosomal protein S17