3D structure

PDB id
6YEF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAA*UGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
6YEF|1|a|U|1193
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YEF_040 not in the Motif Atlas
Homologous match to J3_5J7L_054
Geometric discrepancy: 0.1582
The information below is about J3_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6YEF|1|a|U|1127
6YEF|1|a|A|1128
6YEF|1|a|A|1129
*
6YEF|1|a|U|1165
6YEF|1|a|G|1166
6YEF|1|a|A|1167
6YEF|1|a|C|1168
6YEF|1|a|U|1169
6YEF|1|a|G|1170
6YEF|1|a|C|1171
*
6YEF|1|a|G|1185
6YEF|1|a|A|1186
6YEF|1|a|G|1187
6YEF|1|a|G|1188
6YEF|1|a|A|1189
6YEF|1|a|A|1190
6YEF|1|a|G|1191
6YEF|1|a|G|1192
6YEF|1|a|U|1193
6YEF|1|a|G|1194

Current chains

Chain a
16S rRNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain i
30S ribosomal protein S9
Chain j
ribosomal protein uS10
Chain n
30S ribosomal protein S14

Coloring options:


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