J3_6YEF_041

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGACAUCCU*AAGUGACAG*CUUAUG

Length

26 nucleotides

Bulged bases

6YEF|1|a|A|1055, 6YEF|1|a|U|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|a|C|999
6YEF|1|a|U|1000
6YEF|1|a|U|1001
6YEF|1|a|G|1002
6YEF|1|a|A|1003
6YEF|1|a|C|1004
6YEF|1|a|A|1005
6YEF|1|a|U|1006
6YEF|1|a|C|1007
6YEF|1|a|C|1008
6YEF|1|a|U|1009
*
6YEF|1|a|A|1050
6YEF|1|a|A|1051
6YEF|1|a|G|1052
6YEF|1|a|U|1053
6YEF|1|a|G|1054
6YEF|1|a|A|1055
6YEF|1|a|C|1056
6YEF|1|a|A|1057
6YEF|1|a|G|1058
*
6YEF|1|a|C|1220
6YEF|1|a|U|1221
6YEF|1|a|U|1222
6YEF|1|a|A|1223
6YEF|1|a|U|1224
6YEF|1|a|G|1225

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14