J3_6YHS_003
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUCUA*UAG*CAAG
- Length
- 14 nucleotides
- Bulged bases
- 6YHS|1|1|U|677, 6YHS|1|1|A|783
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YHS_003 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.0702
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YHS|1|1|C|674
6YHS|1|1|G|675
6YHS|1|1|A|676
6YHS|1|1|U|677
6YHS|1|1|C|678
6YHS|1|1|U|679
6YHS|1|1|A|680
*
6YHS|1|1|U|764
6YHS|1|1|A|765
6YHS|1|1|G|766
*
6YHS|1|1|C|782
6YHS|1|1|A|783
6YHS|1|1|A|784
6YHS|1|1|G|785
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain Z
- 50S ribosomal protein L34
Coloring options: