J3_6YHS_006
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAG*CCGAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 6YHS|1|1|G|1598, 6YHS|1|1|A|1600
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YHS_006 not in the Motif Atlas
- Homologous match to J3_7RQB_008
- Geometric discrepancy: 0.2982
- The information below is about J3_7RQB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16623.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YHS|1|1|C|1294
6YHS|1|1|A|1295
6YHS|1|1|A|1296
6YHS|1|1|G|1297
*
6YHS|1|1|C|1596
6YHS|1|1|C|1597
6YHS|1|1|G|1598
6YHS|1|1|A|1599
6YHS|1|1|A|1600
6YHS|1|1|A|1601
6YHS|1|1|C|1602
*
6YHS|1|1|G|1611
6YHS|1|1|U|1612
6YHS|1|1|G|1613
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain Z
- 50S ribosomal protein L34
Coloring options: