J3_6YHS_007

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YHS_007 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1295

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6YHS|1|1|U|1332
6YHS|1|1|C|1333
6YHS|1|1|G|1334
6YHS|1|1|A|1335
6YHS|1|1|C|1336
6YHS|1|1|C|1337
*
6YHS|1|1|G|1370
6YHS|1|1|A|1371
6YHS|1|1|A|1372
6YHS|1|1|A|1373
*
6YHS|1|1|U|1390
6YHS|1|1|A|1391

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L23