J3_6YHS_013
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CC*GUUGAU*AAUUG
- Length
- 13 nucleotides
- Bulged bases
- 6YHS|1|1|U|2822, 6YHS|1|1|A|2824
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YHS_013 not in the Motif Atlas
- Homologous match to J3_7RQB_014
- Geometric discrepancy: 0.3108
- The information below is about J3_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_95952.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YHS|1|1|C|2803
6YHS|1|1|C|2804
*
6YHS|1|1|G|2820
6YHS|1|1|U|2821
6YHS|1|1|U|2822
6YHS|1|1|G|2823
6YHS|1|1|A|2824
6YHS|1|1|U|2825
*
6YHS|1|1|A|2871
6YHS|1|1|A|2872
6YHS|1|1|U|2873
6YHS|1|1|U|2874
6YHS|1|1|G|2875
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L17
- Chain X
- 50S ribosomal protein L32
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