J3_6YHS_014
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACCAUAG*CGC*GUCAU
- Length
- 15 nucleotides
- Bulged bases
- 6YHS|1|5|U|13, 6YHS|1|5|C|106
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YHS_014 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.1825
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6YHS|1|5|A|9
6YHS|1|5|C|10
6YHS|1|5|C|11
6YHS|1|5|A|12
6YHS|1|5|U|13
6YHS|1|5|A|14
6YHS|1|5|G|15
*
6YHS|1|5|C|67
6YHS|1|5|G|68
6YHS|1|5|C|69
*
6YHS|1|5|G|104
6YHS|1|5|U|105
6YHS|1|5|C|106
6YHS|1|5|A|107
6YHS|1|5|U|108
Current chains
- Chain 5
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 50S ribosomal protein L18
- Chain R
- 50S ribosomal protein L25
- Chain S
- 50S ribosomal protein L27
Coloring options: