J3_6YS3_005

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YS3_005 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0666

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6YS3|1|b|C|700
6YS3|1|b|A|701
6YS3|1|b|G|702
*
6YS3|1|b|C|734
6YS3|1|b|G|735
6YS3|1|b|A|736
6YS3|1|b|A|737
6YS3|1|b|C|738
*
6YS3|1|b|G|762
6YS3|1|b|A|763
6YS3|1|b|U|764
6YS3|1|b|G|765

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2