J3_6YS3_015

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6YS3|1|b|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YS3_015 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0674

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6YS3|1|b|G|297
6YS3|1|b|G|298
6YS3|1|b|A|299
6YS3|1|b|A|300
6YS3|1|b|G|301
*
6YS3|1|b|C|316
6YS3|1|b|G|317
6YS3|1|b|C|318
6YS3|1|b|G|319
6YS3|1|b|A|320
6YS3|1|b|U|321
6YS3|1|b|A|322
6YS3|1|b|C|323
6YS3|1|b|A|324
6YS3|1|b|G|325
*
6YS3|1|b|C|337
6YS3|1|b|G|338
6YS3|1|b|U|339
6YS3|1|b|A|340
6YS3|1|b|C|341

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain u

50S ribosomal protein L24