J3_6YS3_018
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6YS3|1|b|A|2392, 6YS3|1|b|U|2394, 6YS3|1|b|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YS3_018 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.078
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6YS3|1|b|G|2286
6YS3|1|b|C|2287
6YS3|1|b|A|2288
*
6YS3|1|b|U|2388
6YS3|1|b|C|2389
6YS3|1|b|A|2390
6YS3|1|b|U|2391
6YS3|1|b|A|2392
6YS3|1|b|G|2393
6YS3|1|b|U|2394
6YS3|1|b|G|2395
6YS3|1|b|A|2396
6YS3|1|b|U|2397
6YS3|1|b|C|2398
6YS3|1|b|C|2399
*
6YS3|1|b|G|2425
6YS3|1|b|C|2426
6YS3|1|b|U|2427
6YS3|1|b|C|2428
6YS3|1|b|A|2429
6YS3|1|b|A|2430
6YS3|1|b|C|2431
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L33
- Chain 7
- 50S ribosomal protein L35
- Chain l
- 50S ribosomal protein L15
- Chain y
- 50S ribosomal protein L27
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