J3_6YS3_019
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 6YS3|1|b|U|2338, 6YS3|1|b|A|2340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YS3_019 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.1161
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6YS3|1|b|C|2299
6YS3|1|b|U|2300
6YS3|1|b|A|2301
6YS3|1|b|A|2302
6YS3|1|b|U|2303
*
6YS3|1|b|A|2321
6YS3|1|b|G|2322
6YS3|1|b|G|2323
6YS3|1|b|U|2324
6YS3|1|b|U|2325
6YS3|1|b|A|2326
6YS3|1|b|G|2327
*
6YS3|1|b|C|2336
6YS3|1|b|A|2337
6YS3|1|b|U|2338
6YS3|1|b|A|2339
6YS3|1|b|A|2340
6YS3|1|b|G|2341
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L5
- Chain o
- 50S ribosomal protein L18
- Chain v
- Transfer RNA; tRNA
- Chain y
- 50S ribosomal protein L27
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