J3_6YSI_002
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AC*GAAAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 6YSI|1|1|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YSI_002 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.0815
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YSI|1|1|A|56
6YSI|1|1|C|57
*
6YSI|1|1|G|70
6YSI|1|1|A|71
6YSI|1|1|A|72
6YSI|1|1|A|73
6YSI|1|1|A|74
6YSI|1|1|G|75
6YSI|1|1|C|76
*
6YSI|1|1|G|110
6YSI|1|1|A|111
6YSI|1|1|U|112
6YSI|1|1|G|113
6YSI|1|1|U|114
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain P
- 50S ribosomal protein L23
- Chain U
- 50S ribosomal protein L29
- Chain Z
- 50S ribosomal protein L34
Coloring options: