J3_6YSI_004

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YSI_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0608

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6YSI|1|1|C|689
6YSI|1|1|A|690
6YSI|1|1|G|691
*
6YSI|1|1|C|723
6YSI|1|1|G|724
6YSI|1|1|A|725
6YSI|1|1|A|726
6YSI|1|1|C|727
*
6YSI|1|1|G|751
6YSI|1|1|A|752
6YSI|1|1|U|753
6YSI|1|1|G|754

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2