J3_6YSI_005

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YSI_005 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1661

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6YSI|1|1|C|1286
6YSI|1|1|G|1287
6YSI|1|1|A|1288
6YSI|1|1|A|1289
6YSI|1|1|A|1290
6YSI|1|1|G|1291
*
6YSI|1|1|C|1616
6YSI|1|1|A|1617
6YSI|1|1|G|1618
*
6YSI|1|1|C|1630
6YSI|1|1|A|1631
6YSI|1|1|A|1632
6YSI|1|1|G|1633

Current chains

Chain 1

23S ribosomal RNA

Nearby chains