J3_6YSI_019
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUA*UCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6YSI|1|1|A|2377, 6YSI|1|1|U|2379, 6YSI|1|1|A|2415
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YSI_019 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0695
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6YSI|1|1|G|2271
6YSI|1|1|U|2272
6YSI|1|1|A|2273
*
6YSI|1|1|U|2373
6YSI|1|1|C|2374
6YSI|1|1|U|2375
6YSI|1|1|U|2376
6YSI|1|1|A|2377
6YSI|1|1|G|2378
6YSI|1|1|U|2379
6YSI|1|1|G|2380
6YSI|1|1|A|2381
6YSI|1|1|U|2382
6YSI|1|1|C|2383
6YSI|1|1|C|2384
*
6YSI|1|1|G|2410
6YSI|1|1|C|2411
6YSI|1|1|U|2412
6YSI|1|1|C|2413
6YSI|1|1|A|2414
6YSI|1|1|A|2415
6YSI|1|1|C|2416
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain H
- 50S ribosomal protein L15
- Chain S
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L33
- Chain a
- 50S ribosomal protein L35
Coloring options: