J3_6YSR_011

3D structure

PDB id

6YSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6YSR|1|A|A|2518, 6YSR|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YSR_011 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0911

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6YSR|1|A|C|2517
6YSR|1|A|A|2518
6YSR|1|A|U|2519
6YSR|1|A|C|2520
*
6YSR|1|A|G|2545
6YSR|1|A|U|2546
6YSR|1|A|A|2547
*
6YSR|1|A|U|2561
6YSR|1|A|U|2562
6YSR|1|A|U|2563
6YSR|1|A|A|2564
6YSR|1|A|A|2565
6YSR|1|A|A|2566
6YSR|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14