J3_6YSS_029

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6YSS|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YSS_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0579

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6YSS|1|A|G|297
6YSS|1|A|G|298
6YSS|1|A|A|299
6YSS|1|A|A|300
6YSS|1|A|G|301
*
6YSS|1|A|C|316
6YSS|1|A|G|317
6YSS|1|A|C|318
6YSS|1|A|G|319
6YSS|1|A|A|320
6YSS|1|A|U|321
6YSS|1|A|A|322
6YSS|1|A|C|323
6YSS|1|A|A|324
6YSS|1|A|G|325
*
6YSS|1|A|C|337
6YSS|1|A|G|338
6YSS|1|A|U|339
6YSS|1|A|A|340
6YSS|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24