3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AC*GAUAAGC*GAUUU
Length
14 nucleotides
Bulged bases
6YST|1|A|U|72, 6YST|1|A|A|74
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YST_002 not in the Motif Atlas
Homologous match to J3_5J7L_037
Geometric discrepancy: 0.1068
The information below is about J3_5J7L_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_35667.2
Basepair signature
cWW-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

6YST|1|A|A|56
6YST|1|A|C|57
*
6YST|1|A|G|70
6YST|1|A|A|71
6YST|1|A|U|72
6YST|1|A|A|73
6YST|1|A|A|74
6YST|1|A|G|75
6YST|1|A|C|76
*
6YST|1|A|G|110
6YST|1|A|A|111
6YST|1|A|U|112
6YST|1|A|U|113
6YST|1|A|U|114

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain T
50S ribosomal protein L23
Chain Y
50S ribosomal protein L29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.8597 s