3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
6YST|1|A|U|2334, 6YST|1|A|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YST_009 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.1279
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

6YST|1|A|C|2295
6YST|1|A|U|2296
6YST|1|A|A|2297
6YST|1|A|A|2298
6YST|1|A|U|2299
*
6YST|1|A|A|2317
6YST|1|A|G|2318
6YST|1|A|G|2319
6YST|1|A|U|2320
6YST|1|A|U|2321
6YST|1|A|A|2322
6YST|1|A|G|2323
*
6YST|1|A|C|2332
6YST|1|A|A|2333
6YST|1|A|U|2334
6YST|1|A|A|2335
6YST|1|A|A|2336
6YST|1|A|G|2337

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain F
50S ribosomal protein L5
Chain O
50S ribosomal protein L18
Chain W
50S ribosomal protein L27

Coloring options:


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