J3_6YST_023

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGU*AUGUUG*CGCAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YST|1|a|U|1073
6YST|1|a|G|1074
6YST|1|a|U|1075
*
6YST|1|a|A|1082
6YST|1|a|U|1083
6YST|1|a|G|1084
6YST|1|a|U|1085
6YST|1|a|U|1086
6YST|1|a|G|1087
*
6YST|1|a|C|1098
6YST|1|a|G|1099
6YST|1|a|C|1100
6YST|1|a|A|1101
6YST|1|a|A|1102

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain e

30S ribosomal protein S5

Chain u

30S ribosomal protein S21