J3_6YST_028

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6YST|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YST_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0915

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6YST|1|A|G|297
6YST|1|A|G|298
6YST|1|A|A|299
6YST|1|A|A|300
6YST|1|A|G|301
*
6YST|1|A|C|316
6YST|1|A|G|317
6YST|1|A|C|318
6YST|1|A|G|319
6YST|1|A|A|320
6YST|1|A|U|321
6YST|1|A|A|322
6YST|1|A|C|323
6YST|1|A|A|324
6YST|1|A|G|325
*
6YST|1|A|C|337
6YST|1|A|G|338
6YST|1|A|U|339
6YST|1|A|A|340
6YST|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24