J3_6YST_038

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6YST|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YST_038 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2354

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6YST|1|a|C|990
6YST|1|a|U|991
6YST|1|a|U|992
6YST|1|a|G|993
6YST|1|a|A|994
6YST|1|a|C|995
6YST|1|a|A|996
6YST|1|a|U|997
*
6YST|1|a|A|1044
6YST|1|a|C|1045
6YST|1|a|A|1046
6YST|1|a|G|1047
*
6YST|1|a|C|1210
6YST|1|a|U|1211
6YST|1|a|U|1212
6YST|1|a|A|1213
6YST|1|a|C|1214
6YST|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14