J3_6YSU_029

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6YSU|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YSU_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0777

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6YSU|1|A|G|297
6YSU|1|A|G|298
6YSU|1|A|A|299
6YSU|1|A|A|300
6YSU|1|A|G|301
*
6YSU|1|A|C|316
6YSU|1|A|G|317
6YSU|1|A|C|318
6YSU|1|A|G|319
6YSU|1|A|A|320
6YSU|1|A|U|321
6YSU|1|A|A|322
6YSU|1|A|C|323
6YSU|1|A|A|324
6YSU|1|A|G|325
*
6YSU|1|A|C|337
6YSU|1|A|G|338
6YSU|1|A|U|339
6YSU|1|A|A|340
6YSU|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24