J3_6Z1P_004

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAG*CGAAC*GAUA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z1P_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1198

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6Z1P|1|Ab|U|579
6Z1P|1|Ab|A|580
6Z1P|1|Ab|G|581
*
6Z1P|1|Ab|C|607
6Z1P|1|Ab|G|608
6Z1P|1|Ab|A|609
6Z1P|1|Ab|A|610
6Z1P|1|Ab|C|611
*
6Z1P|1|Ab|G|635
6Z1P|1|Ab|A|636
6Z1P|1|Ab|U|637
6Z1P|1|Ab|A|638

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ac

Ribosomal protein L2