J3_6Z1P_008

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*UAACUC*GUG

Length

13 nucleotides

Bulged bases

6Z1P|1|Ab|C|1371, 6Z1P|1|Ab|U|1372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z1P_008 not in the Motif Atlas

Geometric match to J3_8OI5_013

Geometric discrepancy: 0.3692

The information below is about J3_8OI5_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6Z1P|1|Ab|C|1180
6Z1P|1|Ab|A|1181
6Z1P|1|Ab|A|1182
6Z1P|1|Ab|G|1183
*
6Z1P|1|Ab|U|1368
6Z1P|1|Ab|A|1369
6Z1P|1|Ab|A|1370
6Z1P|1|Ab|C|1371
6Z1P|1|Ab|U|1372
6Z1P|1|Ab|C|1373
*
6Z1P|1|Ab|G|1382
6Z1P|1|Ab|U|1383
6Z1P|1|Ab|G|1384

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AI

Ribosomal protein L27