J3_6Z1P_017

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGA*UGAU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z1P_017 not in the Motif Atlas

Geometric match to J3_8P9A_071

Geometric discrepancy: 0.398

The information below is about J3_8P9A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01633.1

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6Z1P|1|Bb|U|581
6Z1P|1|Bb|G|582
6Z1P|1|Bb|A|583
*
6Z1P|1|Bb|U|641
6Z1P|1|Bb|G|642
6Z1P|1|Bb|A|643
6Z1P|1|Bb|U|644
*
6Z1P|1|Bb|A|743
6Z1P|1|Bb|G|744

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Bo

30S ribosomal protein S15

Chain Bq

30S ribosomal protein S17

Chain Bv

mS26