J3_6Z1P_025

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAA*UACCAUAGAG*CGUAA

Length

20 nucleotides

Bulged bases

6Z1P|1|Aa|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z1P_025 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.1348

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6Z1P|1|Aa|U|228
6Z1P|1|Aa|G|229
6Z1P|1|Aa|A|230
6Z1P|1|Aa|A|231
6Z1P|1|Aa|A|232
*
6Z1P|1|Aa|U|247
6Z1P|1|Aa|A|248
6Z1P|1|Aa|C|249
6Z1P|1|Aa|C|250
6Z1P|1|Aa|A|251
6Z1P|1|Aa|U|252
6Z1P|1|Aa|A|253
6Z1P|1|Aa|G|254
6Z1P|1|Aa|A|255
6Z1P|1|Aa|G|256
*
6Z1P|1|Aa|C|268
6Z1P|1|Aa|G|269
6Z1P|1|Aa|U|270
6Z1P|1|Aa|A|271
6Z1P|1|Aa|A|272

Current chains

Chain Aa

LSU rRNA_1

Nearby chains

Chain Ab

Large subunit ribosomal RNA; LSU rRNA

Chain Ae

50S ribosomal protein L4

Chain Ay

50S ribosomal protein L24