J3_6Z1P_031
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUA*UCAUAUUGACCC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6Z1P|1|Ab|A|2120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z1P_031 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1581
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6Z1P|1|Ab|G|1976
6Z1P|1|Ab|U|1977
6Z1P|1|Ab|A|1978
*
6Z1P|1|Ab|U|2078
6Z1P|1|Ab|C|2079
6Z1P|1|Ab|A|2080
6Z1P|1|Ab|U|2081
6Z1P|1|Ab|A|2082
6Z1P|1|Ab|U|2083
6Z1P|1|Ab|U|2084
6Z1P|1|Ab|G|2085
6Z1P|1|Ab|A|2086
6Z1P|1|Ab|C|2087
6Z1P|1|Ab|C|2088
6Z1P|1|Ab|C|2089
*
6Z1P|1|Ab|G|2115
6Z1P|1|Ab|A|2116
6Z1P|1|Ab|U|2117
6Z1P|1|Ab|C|2118
6Z1P|1|Ab|A|2119
6Z1P|1|Ab|A|2120
6Z1P|1|Ab|C|2121
Current chains
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain AA
- 50S ribosomal protein L27
- Chain AE
- 50S ribosomal protein L33
- Chain AF
- bL35m
- Chain Aa
- LSU rRNA_1
- Chain Aq
- Ribosomal protein L15, putative
Coloring options: