J3_6Z1P_039

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGCGCAAA*UGGCAUUAUAU*AAUGGCAUGG

Length

30 nucleotides

Bulged bases

6Z1P|1|Bb|C|1494, 6Z1P|1|Bb|U|1497, 6Z1P|1|Bb|A|1498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z1P|1|Bb|C|1459
6Z1P|1|Bb|U|1460
6Z1P|1|Bb|G|1461
6Z1P|1|Bb|C|1462
6Z1P|1|Bb|G|1463
6Z1P|1|Bb|C|1464
6Z1P|1|Bb|A|1465
6Z1P|1|Bb|A|1466
6Z1P|1|Bb|A|1467
*
6Z1P|1|Bb|U|1491
6Z1P|1|Bb|G|1492
6Z1P|1|Bb|G|1493
6Z1P|1|Bb|C|1494
6Z1P|1|Bb|A|1495
6Z1P|1|Bb|U|1496
6Z1P|1|Bb|U|1497
6Z1P|1|Bb|A|1498
6Z1P|1|Bb|U|1499
6Z1P|1|Bb|A|1500
6Z1P|1|Bb|U|1501
*
6Z1P|1|Bb|A|1510
6Z1P|1|Bb|A|1511
6Z1P|1|Bb|U|1512
6Z1P|1|Bb|G|1513
6Z1P|1|Bb|G|1514
6Z1P|1|Bb|C|1515
6Z1P|1|Bb|A|1516
6Z1P|1|Bb|U|1517
6Z1P|1|Bb|G|1518
6Z1P|1|Bb|G|1519

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Ad

50S ribosomal protein L3

Chain BV

mS90

Chain BY

mS93

Chain Bz

mS34