J3_6Z1P_040

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

6Z1P|1|Ab|U|567, 6Z1P|1|Ab|A|667, 6Z1P|1|Ab|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z1P_040 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.2268

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6Z1P|1|Ab|U|564
6Z1P|1|Ab|G|565
6Z1P|1|Ab|A|566
6Z1P|1|Ab|U|567
6Z1P|1|Ab|C|568
6Z1P|1|Ab|U|569
6Z1P|1|Ab|A|570
*
6Z1P|1|Ab|U|648
6Z1P|1|Ab|A|649
6Z1P|1|Ab|G|650
*
6Z1P|1|Ab|C|666
6Z1P|1|Ab|A|667
6Z1P|1|Ab|A|668
6Z1P|1|Ab|A|669

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ac

Ribosomal protein L2