J3_6Z6J_036
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 6Z6J|1|C1|G|2549, 6Z6J|1|C1|U|2550, 6Z6J|1|C1|U|2551, 6Z6J|1|C1|C|2552, 6Z6J|1|C1|U|2553, 6Z6J|1|C1|A|2554, 6Z6J|1|C1|U|2558, 6Z6J|1|C1|U|2559, 6Z6J|1|C1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6J_036 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.1726
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6Z6J|1|C1|A|2529
6Z6J|1|C1|G|2530
6Z6J|1|C1|C|2531
6Z6J|1|C1|U|2532
*
6Z6J|1|C1|A|2547
6Z6J|1|C1|C|2548
6Z6J|1|C1|G|2549
6Z6J|1|C1|U|2550
6Z6J|1|C1|U|2551
6Z6J|1|C1|C|2552
6Z6J|1|C1|U|2553
6Z6J|1|C1|A|2554
6Z6J|1|C1|G|2555
6Z6J|1|C1|C|2556
6Z6J|1|C1|A|2557
6Z6J|1|C1|U|2558
6Z6J|1|C1|U|2559
6Z6J|1|C1|C|2560
6Z6J|1|C1|A|2561
6Z6J|1|C1|A|2562
6Z6J|1|C1|G|2563
*
6Z6J|1|C1|U|2578
6Z6J|1|C1|G|2579
6Z6J|1|C1|A|2580
6Z6J|1|C1|U|2581
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-A
- Chain LG
- 60S ribosomal protein L8-A
- Chain LX
- 60S ribosomal protein L25
- Chain LZ
- 60S ribosomal protein L27-A
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34-A
- Chain Lp
- 60S ribosomal protein L43-A
Coloring options: