J3_6Z6J_038
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 6Z6J|1|C1|A|3172, 6Z6J|1|C1|G|3173, 6Z6J|1|C1|A|3215, 6Z6J|1|C1|G|3216, 6Z6J|1|C1|C|3217, 6Z6J|1|C1|A|3218, 6Z6J|1|C1|G|3219, 6Z6J|1|C1|A|3268, 6Z6J|1|C1|U|3270, 6Z6J|1|C1|C|3272, 6Z6J|1|C1|C|3278
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6J_038 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.1789
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6Z6J|1|C1|U|3171
6Z6J|1|C1|A|3172
6Z6J|1|C1|G|3173
6Z6J|1|C1|A|3174
6Z6J|1|C1|U|3175
6Z6J|1|C1|G|3176
*
6Z6J|1|C1|C|3212
6Z6J|1|C1|A|3213
6Z6J|1|C1|U|3214
6Z6J|1|C1|A|3215
6Z6J|1|C1|G|3216
6Z6J|1|C1|C|3217
6Z6J|1|C1|A|3218
6Z6J|1|C1|G|3219
6Z6J|1|C1|G|3220
*
6Z6J|1|C1|C|3265
6Z6J|1|C1|G|3266
6Z6J|1|C1|A|3267
6Z6J|1|C1|A|3268
6Z6J|1|C1|U|3269
6Z6J|1|C1|U|3270
6Z6J|1|C1|G|3271
6Z6J|1|C1|C|3272
6Z6J|1|C1|A|3273
6Z6J|1|C1|A|3274
6Z6J|1|C1|U|3275
6Z6J|1|C1|G|3276
6Z6J|1|C1|U|3277
6Z6J|1|C1|C|3278
6Z6J|1|C1|A|3279
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LE
- 60S ribosomal protein L6-A
- Chain LM
- 60S ribosomal protein L14-A
- Chain LO
- 60S ribosomal protein L16-A
- Chain LP
- 60S ribosomal protein L17-A
- Chain Lf
- 60S ribosomal protein L33-A
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